Our experts turn ideas into powerful web, SaaS, mobile and bioinformatics solutions.
Enterprise Data Warehousing: Architecture and implementation of scalable genomic data warehouses using modern data platforms like Snowflake and Databricks, alongside native cloud services (AWS, Azure, GCP).
Automated Ingestion & Data Management: Automated instrument data ingestion to cloud storage, centralized database parsing, and scalable facilities for exporting targeted genomic data (e.g., VCFs) for downstream analysis.
Infrastructure as Code (IaC) & DevOps: Automated deployment and robust CI/CD pipelines utilizing industry standards such as Terraform, Octopus Deploy, GitHub Actions, GitLab CI, and advanced monitoring platforms like Datadog.
Scalable Secondary Analysis: Development of robust, portable bioinformatics pipelines (e.g., Nextflow) deployed seamlessly across on-premises infrastructure and major cloud providers (AWS, Azure, GCP).
Comprehensive Variant Calling: End-to-end pipelines for the mapping and calling of both small and structural variants.
Automated QA & Visualization: Built-in quality assurance processes calculating key metrics, applying validation thresholds, and generating automated visualization plots to ensure run integrity.
Enterprise Data Warehousing: Architecture and implementation of scalable genomic data warehouses using modern data platforms like Snowflake and Databricks, alongside native cloud services (AWS, Azure, GCP).
Automated Ingestion & Data Management: Automated instrument data ingestion to cloud storage, centralized database parsing, and scalable facilities for exporting targeted genomic data (e.g., VCFs) for downstream analysis.
Infrastructure as Code (IaC) & DevOps: Automated deployment and robust CI/CD pipelines utilizing industry standards such as Terraform, Octopus Deploy, GitHub Actions, GitLab CI, and advanced monitoring platforms like Datadog.
Streamlined a laboratory’s transgene validation workflow by developing custom plugins for the Geneious application. One plugin integrated various external QC tools directly into the UI, while another automatically collated metrics and applied strict thresholds to ensure runs met all validation criteria.
Partnered with a client to develop extensive Nextflow secondary analysis pipelines incorporating bespoke algorithms. We actively participated in executing the rigorous validation studies required for their successful FDA CDx submission.
Developed and deployed Nextflow secondary analysis pipelines for both on-premise and AWS environments. These pipelines handle mapping and small/structural variant calling while generating comprehensive QA metrics and visualization plots.
Engineered an AWS/Snowflake data warehouse that automatically ingests instrument data and genotypes. The system features automated QA processes (such as sample sex and parentage verification) and enables seamless export of targeted VCFs, all managed via Terraform and continuously monitored with Datadog.